Vanilla Bug - Unsolved Settlers/NPCs die when location was take as vassal

[Zason]

So I started a new game. Followed raider quest line. Took a Red Rocket as a base. Then took a Abernathy farm as vassal. After I took it, I don't think anyone died, only subdued. Raiders nor settlers (all pacified). But once quest completed all of the settlers died but one (maybe two). kinggath confirmed it wasn't normal in my question thread.

Here is additional info I have for a bug report.
By load order via Vortex txt file

# Automatically generated by Vortex
ccbgsfo4033-powerarmorskinwhite.esl
ccgcafo4003-factionws03bos.esl
ccgcafo4005-factionws05hrpink.esl
ccgcafo4007-factionws07hrflames.esl
ccgcafo4021-factionas10hrflames.esl
ccygpfo4001-pipcruiser.esl
ccbgsfo4073-pipmman.esl
ccbgsfo4078-pipreily.esl
*Unofficial Fallout 4 Patch.esp
*HUDFramework.esm
*ArmorKeywords.esm
*SimSettlements.esm
*WorkshopFramework.esm
*Sanctuary by VikingBaggins.esl
*springfield 1971_PresetMale02.esp
*SimSettlements_XPAC_IndustrialRevolution.esp
*SettlementMenuManager.esp
*Armorsmith Extended.esp
*FaceMaxson.esp
*LegendaryModification.esp
*PA-Quick Animations.esp
*Reverb and Ambiance Overhaul.esp
*Quieter Settlements - Contraptions.esp
*Quieter Settlements - Vanilla.esp
*Quieter Settlements - Wasteland Workshop.esp
*ScrapDeadThings.esp
*Fog Remover II (AIO) Recommended.esp
*Eli_Armour_Compendium.esp
*CheatTerminal.esp
*SimSettlements_XPAC_Conqueror.esp
*SS_AddOn_CbC_AIO.esp
*SimSettlements_MegaPack_YearOne.esp
*SimSettlements_XPAC_RiseOfTheCommonwealth.esp
*EpilogueRestored.esp
*Insignificant Object Remover.esp
*Fog Remover II - Far Harbor Only.esp
*Fog Remover II - Smoke Only.esp
*Fog Remover II - Steam Only.esp
*Sim_Settlements_Mayors.esp
*SimSettlements_CityPlanPack_ContestEntries.esp
*PackBrahminsToEyebots_Settlements.esp
*RadioSilence.esp

Here is the video of the incident. I was working on a play-through series but am going to do it over since I've been having PC issues.

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[GarackTheMad]

I am having the same issue. My load order:

Spoiler

00 Fallout4.esm
01 DLCRobot.esm
02 DLCworkshop01.esm
03 DLCCoast.esm
04 DLCWorkshop02.esm
05 DLCWorkshop03.esm
06 DLCNukaWorld.esm
07 Unofficial Fallout 4 Patch.esp [Version 2.0.6b]
08 HUDFramework.esm
09 Snap'n Build.esm
0A ArmorKeywords.esm
0B RadiationProtectorESL.esl
0C LARGE_Immersive_Molotovs_Flamer_Ruddy88ExtendedESL.esl
0D ArcadeTerminals.esl
0E Settler Sandbox Overhaul.esl
0F Loot Detector.esl
10 SimSettlements.esm [Version 4.0.0]
11 WorkshopFramework.esm [Version 1.1.0]
12 Sanctuary by VikingBaggins.esl [Version 1.0]
13 Sim Settlements VIS-G Patch.esl
14 SimSettlements_IDEKsLogisticsStation.esl
15 XDI.esm
16 Worsin's Garage.esm
17 CraftingPackCombined.esl
18 CROSS_Blades.esp
19 UncappedSettlementSurplus.esp
1A AllSetsExtended.esp
1B A Sensible Prydwen Overhaul.esp
1C Actually Viable Junk Jet.esp
1D Advanced Settlement Power - Contraptions.esp
1E Advanced Settlement Power.esp
1F Nuka-Cola Flavors for the Commonwealth.esp
20 VIS-G Item Sorting.esp
21 Better Manufacturing.esp
22 Better Manufacturing - Valdacil Patch NW.esp
23 MoreOutfitVariations.esp
24 Armorsmith Extended.esp
25 DCGuardOutfitOverride.esp
26 ASEFarHarbor.esp
27 Automatron Protectrons Expanded.esp
28 RobotFactionPaint.esp
29 AA Better Companions - No Conflicts.esp
2A Perks Unleashed.esp
2B ChosenOne_nolevel.esp
2C BetterSettlersNoLollygagging.esp
2D WIPAG_Power Armor Overhaul.esp
2E NuclearPhysicistFix.esp
2F VIS-G Legendary Modifications.esp
30 Crafting Mastery.esp
31 Logical Recipes.esp
32 CommChemExpanded.esp
33 Better Settlement Defence.esp
34 CommChemExp-ValdacilSorting-Patch.esp
35 CompactCrafting.esp
36 CompanionStatus.esp
37 CompanionsGoHome_A.esp
38 ConveyorBarriers.esp
39 Provisioner Tracker.esp
3A CROSS_GoreCrits.esp
3B CROSS_GoreCrits_FarHarborPatch.esp
3C Decal Stain Remover REDUX - All DLC.esp
3D DetectDroppedWeapon.esp
3E Easier Hacking - 1 Word.esp
3F EasyLockpicking.esp
40 EveryonesBestFriend.esp
41 Extra Shipments.esp
42 Faster Terminal Displays (100x).esp [Version 3.0]
43 FO4Hotkeys.esp
44 GatlingLaserAmmoFix.esp
45 Gunsmith Extended.esp
46 HoloTime.esp
47 Housekeeping.esp
48 Linked Storage Containers.esp
49 LongerPowerLines3x.esp
4A ManufacturingExtended.esp
4B ManufacturingExtendedFH.esp
4C BostonFPSFixAIO.esp
4D The Collector's Guides AIO.esp
4E Eli_Armour_Compendium.esp
4F NoFeatureItems.esp
50 PickpocketExp.esp
51 PlantMe.esp
52 PlutoniumCreatures.esp
53 AzarPonytailHairstyles.esp
54 PA-Quick Animations.esp
55 PowerArmorStorageSystem.esp
56 Protected Arena Combatant.esp
57 QuickTrade.esp
58 Radio Freedom all in one.esp
59 Radioactivebarrels.esp
5A PackBrahminsToEyebots_Settlements.esp
5B Eli Armor Compendium AE Patch.esp
5C SalvageRobotParts.esp
5D SettlementGarageSale.esp
5E SettlementMenuManager.esp
5F Settlement Menu Manager VIS-G.esp
60 SettleObjExpandPack.esp
61 SettlementObjExpandPack VIS-G.esp
62 SkjAlert_All_DLC.esp
63 SwampsEXPANDED.esp
64 SA-SyringerAmmoOverhaul.esp
65 BetterJunkFences.esp
66 Snappy_HouseK.esp
67 Snappy_DLC03.esp
68 Synths Revamped.esp
69 LureEnemies.esp
6A KURO.esp
6B True Legendary Enemies.esp
6C TurretControlPanel.esp
6D UNnaked Power Armor.esp
6E VaultPlus.esp
6F Vault-Tec Workshop Overhaul.esp
70 VertibirdBeacon.esp
71 VisibleCompanionAffinity.esp
72 AnS Wearable Backpacks and Pouches.esp
73 AnS Wearable Backpacks and Pouches - No Crafting Perks.esp
74 AnS Wearable Backpacks and Pouches - AWKCR.esp
75 AnS Wearable Backpacks and Pouches - Ballistic Weave.esp
76 AnS Wearable Backpacks and Pouches - Power Armor Carry Capacity.esp
77 AnS Wearable Backpacks and Pouches - AWKCR Power Armor.esp
78 SpotlightFix-150.esp
79 WorkshopSupplyRemover.esp
7A WorthwhileEyebots.esp
7B Better Manufacturing - Manufacturing Extended Additions.esp
7C WSSRExtended.esp
7D ImmersiveScrapping_SeasonPass.esp
7E FO4Hotkeys VIS-G.esp
7F BetterSettlers.esp
80 BetterSettlersLightArmorOnly.esp
81 BetterSettlersCCAPack2.0.esp
82 LooksMenu.esp
83 TransferSettlements.esp
84 TransferSettlements VIS-G.esp
85 AEWS.esp
86 ModdableRobotSettlers.esp
87 AEWS_NukaWorldPatch.esp
88 ClassicShacks.esp
89 Vertibird Faction Paint Schemes.esp
8A W.A.T.Minutemen.esp
8B Minuteman Watchtowers.esp
8C Nuka-World Collectable Markers.esp
8D ExperimentsUnleashed.esp
8E VIS-G We Are The Minutemen.esp
8F ConcordMusuemRestoration.esp
90 VFXAddon.esp
91 SimSettlements_XPAC_Conqueror.esp [Version 4.0.0]
92 WhirligigSentry.esp
93 WorkshopPlus.esp [Version 1.0.4]
94 B84sThemedResidentials.esp
95 TeleportersFastTravel.esp
96 BunkerHillMinPatrol.esp
97 Home Plate Workbench - Mechanists Lair Workbench.esp
98 SK_Leaders1.esp
99 SimSettlements_AddOnPack_AwsomeTown.esp
9A JunkTown.esp [Version 11]
9B ruined_simsettlement_addonpack.esp
9C DWUK_LexingtonInteriors.esp
9D RRShuttersAndDoors.esp
9E RRShutteredDoors.esp
9F SimSettlementsAddOnPack - RaiderRefugees.esp
A0 EpilogueRestored.esp
A1 TrailerParkDreams.esp
A2 ohSIM_Sim_Settlements_Scrappers_Addon.esp
A3 BetterShackBridges.esp
A4 SimHomestead.esp
A5 PCDugBuildAWall.esp
A6 RRTV_TeaganSellsBOSClothing.esp
A7 SalvageBeacons.esp [Version 1.0.2]
A8 WoodenPrefabsExtended.esp
A9 WareHouseExt.esp
AA ProjectBlueprintCOBJs_Sim_Automatron.esp
AB WVSimSAddon.esp [Version 4.0.0]
AC SimSettlements_MegaPack_YearOne.esp [Version 1.0.5]
AD PCDugTriangularRevolution.esp
AE PCDugWedges.esp
AF JP_GuardTowers.esp
B0 FactionFlagsRedux_SimSettlementsAddOn.esp
B1 IndustrialCity_Sim_Settlements_Addon.esp
B2 diziet_cabin2.esp [Version 1.0]
B3 MJC_Sim_Settlements_Addon.esp [Version FREE1.3.3]
B4 Hamed04 Sim Settlements Foundation AddOn.esp
B5 Altairp's Animal Farm.esp
B6 VaultTecAcceleratedFocusSystem.esp
B7 VaultTecAcceleratedFocusSystem - FarHarbor.esp
B8 VaultTecAcceleratedFocusSystem - NukaWorld.esp
B9 CPO Sniper.esp
BA Binary Pickpocket Overhaul.esp
BB PerksUnleashedPatches.esp
BC Binary Speech Checks V.4 Forgiving.esp
BD Crafting Mastery - Patch Sim Settlements.esp
BE ProjectBlueprintCOBJs_Sim.esp
BF ProjectBlueprint.esp
C0 ProjectBlueprintCOBJs_Sim_FarHarbor.esp
C1 SimSettlements_AddOnPack_Foundations_JtBryant.esp
C2 SimSettlements_AddOnPack_SimTowers_JtBryant.esp
C3 SS MegaPackOneYear-Previews.esp
C4 SimSettlements Previews Newest.esp
C5 PCDugSIMAddon.esp
C6 visitors_centre_diziet.esp [Version 1.0]
C7 ss_addon_pbpp.esp
C8 SimSettlements_CityPlanPack_ContestEntries.esp [Version 1.0.3]
C9 VIS-G Patches.esp
CA IncreasedWeaponModDistribution-GOTY.esp
CB BossChestsHaveLegendaryChips.esp
CC BossChestsHaveLegendaries.esp
CD WIPAG_Decal Station.esp
CE WIPAG_Paint Garage - Full (Easy).esp
CF Mechanist Lair Overhaul.esp
D0 Bashed Patch, 0.esp

 

[Coldfire4134]

The same thing is happening to me, but slightly more explosive with the slaves. My only plugins are:
Fallout4.esm
DLCNukaWorld.esm
SimSettlements.esm (3 in 1 version)
WorkshopFramework.esm
SimSettlements_XPAC_Conqueror.esp

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[kinggath]

This is fixed for Friday's upcoming patches!

 

[Coldfire4134]

Thank you!